1. Next-Gen Sequence Analysis Workshop (2019)

These are the schedule and classroom materials for the ANGUS workshop at UC Davis, which will run from July 1st to July 13th, 2019. ANGUS is part of the 2019 Data Intensive Biology Summer Institute.

This workshop runs under a Code of Conduct. Please respect it and be excellent to each other!

We hope that we can respect each other by following these guidelines & expectations.

Please submit your feedback here on any aspect of the workshop. We encourage feedback from everyone involved in the workshop in any capacity

Twitter hash tag: #dibsi2019

1.1. 3 Rooms & lead instructors!

Room Mexía will be led by Rocio Martinez-Nunez and Taylor Reiter, in 1043 Valley.

Room Lovelace will enjoy the leadership of Chissa Rivaldi and Mike Lee, in 1041 Valley.

Room Conway will be led by Sateesh Peri & Marian Schmidt, in 2020 Valley.

1.2. Schedule, in brief:

Monday, July 1st, 2019:

Tuesday, July 2nd, 2019:

Wednesday, July 3rd, 2019:

  • 9:00-9:15am: Meet in Lecture Room (1030) for quick meeting

  • 9:20-10:20am: Wrapping up Introduction to the Shell

    • 10:20-10:40am: BREAK

  • 10:40am-12:00pm: Wrapping up Introduction to the Shell

    • 12:00-1:00pm: LUNCH

  • 1:00-2:00pm: Amanda Charbonneau: How to statistics Slides - view recording

    • 2:00-2:10pm: BREAK

  • 2:15-3:30pm: Logging onto the Cloud

    • 3:30-3:50pm: BREAK

  • 3:50-5:00pm: Conda

    • 5:00pm: DONE

Thursday, July 4th, 2019

Friday, July 5th, 2019

1.3. Second week: July 8-13, 2019.

Monday, July 8th, 2019

Tuesday, July 9th, 2019

Wednesday, July 10th, 2019

Thursday, July 11th, 2019

Friday, July 12th, 2019

Saturday, July 13th, 2019

(check out of your rooms and bring luggage over. Please be sure to bring your computer!)

  • 9:00am-9:30am: Cloud Resources with Sateesh Peri

  • 9:30am-10:00am: 5 things I wish I knew by Mike Lee

  • 10:00am-10:20am: What to Slack after DIBSI? by Shannon Joslin

    • 10:20am-10:40am: BREAK

  • 10:40am-11:00am: Survey in Room 1030

  • 11:00am-11:30am: Classroom feedback–1up/1down (in classrooms) & TA / Instructor meeting (in Rm1030)

  • 11:30am-12:00pm: Titus Wrap up & Outro

    • 12:00pm: THANK YOU & HAPPY TRAVELS!

Some contact info 😊